Funes el memorioso

Number of Processors

[yuy121@cyberstar231: ~]# grep "^processor" /proc/cpuinfo 
processor	: 0
processor	: 1
processor	: 2
processor	: 3
processor	: 4
processor	: 5
processor	: 6
processor	: 7
processor	: 8
processor	: 9
processor	: 10
processor	: 11
processor	: 12
processor	: 13
processor	: 14
processor	: 15
processor	: 16
processor	: 17
processor	: 18
processor	: 19
processor	: 20
processor	: 21
processor	: 22
processor	: 23
processor	: 24
processor	: 25
processor	: 26
processor	: 27
processor	: 28
processor	: 29
processor	: 30
processor	: 31

Memory Information

[yuy121@cyberstar231: ~]# cat /proc/meminfo 
MemTotal:     528642176 kB
MemFree:      524562356 kB
Buffers:        461100 kB
Cached:        2118892 kB
SwapCached:          0 kB
Active:        1672396 kB
Inactive:      1595732 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:     528642176 kB
LowFree:      524562356 kB
SwapTotal:     2096472 kB
SwapFree:      2096472 kB
Dirty:             120 kB
Writeback:           0 kB
AnonPages:      688120 kB
Mapped:         118552 kB
Slab:           427984 kB
PageTables:       6836 kB
NFS_Unstable:        0 kB
Bounce:              0 kB
CommitLimit:  504306536 kB
Committed_AS:  1280648 kB
VmallocTotal: 34359738367 kB
VmallocUsed:    371456 kB
VmallocChunk: 34359366851 kB
HugePages_Total:     0
HugePages_Free:      0
HugePages_Rsvd:      0
Hugepagesize:     2048 kB

The data is at

/gpfs/scratch/yuy121/Bio

The program is at

/gpfs/work/yuy121

Last login: Fri Feb  1 03:11:02 2013 from *.cse.psu.edu
[yuy121@cyberstar: ~]# cd /gpfs/work/yuy121/samtools/
[yuy121@cyberstar: /gpfs/work/yuy121/samtools]# ls
AUTHORS          bam_reheader.c  faidx.c         misc
bam2bcf.c        bam_rmdup.c     faidx.h         NEWS
bam2bcf.h        bam_rmdupse.c   INSTALL         padding.c
bam2bcf_indel.c  bam_sort.c      kaln.c          phase.c
bam2depth.c      bam_stat.c      kaln.h          razf.c
bam_aux.c        bamtk.c         khash.h         razf.h
bam.c            bam_tview.c     klist.h         razip.c
bam_cat.c        bcftools        knetfile.c      sam.c
bam_color.c      bedidx.c        knetfile.h      sam.h
bam_endian.h     bgzf.c          kprobaln.c      sam_header.c
bam.h            bgzf.h          kprobaln.h      sam_header.h
bam_import.c     bgzip.c         kseq.h          sample.c
bam_index.c      ChangeLog.old   ksort.h         sample.h
bam_lpileup.c    COPYING         kstring.c       samtools
bam_mate.c       cut_target.c    kstring.h       samtools.1
bam_md.c         errmod.c        libbam.a        sam_view.c
bam_pileup.c     errmod.h        Makefile        win32
bam_plcmd.c      examples        Makefile.mingw
[yuy121@cyberstar: /gpfs/work/yuy121/samtools]# ls /gpfs/scratch/yuy121/Bio/
NA19240_GAIIx_100_chr21.bam
[yuy121@cyberstar: /gpfs/work/yuy121/samtools]# ./samtools view -H /gpfs/scratch/yuy121/Bio/NA19240_GAIIx_100_chr21.bam 
[yuy121@cyberstar: /gpfs/work/yuy121/samtools]# ./samtools view /gpfs/scratch/yuy121/Bio/NA19240_GAIIx_100_chr21.bam